Mpox virus (MPXV)

A collection of resources and documents for the genome sequencing of Mpox virus (MPXV) using a tiled amplicon approach.

Resources and documents

• Mpox virus (MPXV) resources

link: /mpxv/resources.html

• Mpox virus sequencing

link: /mpxv/artic-mpxv-guide.html

Setup guides

• Setting up and using EPI2ME for MPXV analysis pipelines

link: /mpxv/mpxv-epi2me-setup.html

User-interface pipelines using Epi2me

• Running the MPXV alignment and phylogenetics pipeline using Epi2Me

link: /mpxv/mpxv-phylogenetics-epi2me-sop.html

• Running a bioinformatics pipeline for Illumina data using EPI2ME

link: /mpxv/mpxv-illumina-epi2me-sop.html

• Running the ARTIC nanopore bioinformatics pipeline using EPI2ME

link: /mpxv/mpxv-ont-epi2me-sop.html

Command line interface pipeline SOPs

• MPXV Nanopore sequencing bioinformatics protocol

link: /mpxv/mpxv-bioinformatics-sop.html