We have designed a multiplex primer scheme for Zaire Ebolavirus.
This has been tested and validated on a number of Zaire Ebolavirus isolates (Makona, Mayinga/Ecran, and Kikwit).
The primer scheme is available from the Github repository:
It does not work with non-Zaire Ebolaviruses (e.g. Reston, Sudan)
MinION data is available here: