Check out our software
Visualization of the hCoV-19 coronavirus phylogeny
Lab-on-an-SSD is a self-contained Linux bootable environment for nanopore sequencing and data analysis performed locally on laptops.
Time is crucial in outbreak analysis, and recent advancements in sequencing prep now mean that sequencing is the bottleneck for many pathogens. Furthermore, the small size of many pathogens mean that insightful sequence data is obtained in a matter of minutes. RAMPART run concurrently with MinION sequencing of such pathogens. It provides a real-time overview of genome coverage and reference matching for each barcode.
All our software is accesible via the GitHub ARTIC group