Training Guides
Tiling amplicon sequencing
A quick guide to tiling amplicon sequencing and downstream bioinformatics analysis
How to read a tree
Part 2: Estimating time scales using molecular clocks
How to read a phylogenetic tree
Part 1: An introduction to phylogenetic trees and how to interpret them.
Metagenomics background & analytic approaches
A quick guide to metagenomic analysis through classification methods
Tutorials
Practical genomic epidemiology
Practical genomic epidemiology
Practical genomic epidemiology (abridged)
Practical genomic epidemiology
Links and Resources
Epi-simulator
Outbreak simulator
IQTree2
Maximum likelihood phylogenetic software