Training Guides

guide-tiling-amplicon-sequencing-and-bioinformatics.md

A quick guide to tiling amplicon sequencing and downstream bioinformatics analysis

estimating_time_scales.md

How to read a tree part 2: Estimating time scales using molecular clocks

how_to_read_a_tree.md

How to read a phylogenetic tree

mev-background.md

MeV virus sequencing

mev-sequencing-guide.md

MeV virus sequencing

mpxv-sequencing-guide.md

Mpox virus sequencing

Tutorials

workshop_genomic_epidemiology.md

Practical genomic epidemiology

This tutorial presents an outbreak scenario that starts with a small number of initial cases with no known infectious agent. We will initially identify the p...

workshop_gen_epi_abridged.md

This tutorial presents an outbreak scenario that starts with a small number of initial cases with no known infectious agent. We will initially identify the p...