EBOV
(Ebola virus)

A collection of resources for whole genome sequencing and analysis of Ebola virus (EBOV)

MeV
(Measles virus)

A collection of resources for whole genome sequencing and analysis of Measles virus (MeV)

MPXV
(mpox virus)

A collection of resources and documents for the genome sequencing of Mpox virus (MPXV)

SARS-CoV-2
(COVID-19)

A collection of resources for whole genome sequencing and analysis of SARS-CoV-2

Tiled amplicon sequencing

Resources and protocols for tiled amplicon sequencing

Metagenomic sequencing

Resources and protocols for metagenomic sequencing

amplicon-nf

A nextflow pipeline for viral amplicon sequencing data

Fieldbioinformatics

A pipeline for working with viral nanopore sequencing data, generated from tiling amplicon schemes

PrimalScheme

Software to generate primer schemes for tiled amplicon sequencing from a virus Multiple Sequence Alignment.

RAMPART

Read Assignment, Mapping, and Phylogenetic Analysis in Real Time.

Squirrel

Some QUIck Reconstruction to Resolve Evolutionary Links