EBOV (Ebola virus)

A collection of resources for whole genome sequencing and analysis of Ebola virus (EBOV)

Resources and documents

• Ebola virus bioinformatics protocol

link: /viruses/ebov/ebov-bioinformatics-sop.html

• Ebola virus sequencing kit-list

link: /viruses/ebov/ebov-seq-kit.html

• Ebola virus bioinformatics environment setup

link: /viruses/ebov/ebov-it-setup.html

• Ebola virus sequencing protocol

link: /viruses/ebov/ebov-seq-sop.html

link: /viruses/ebov/ebov-validation.html

• Ebola virus phylogenetic analysis protocol

link: /viruses/ebov/ebov-phylogenetics-sop.html

• Ebola virus phylogenetic analysis protocol

link: /viruses/ebov/ebov-phylogenetics-sop-ituri.html

• Ebola virus sequencing protocol

link: /viruses/ebov/ebov-seq-sop-fr.html

Setup guides

• Running the ARTIC MPXV analysis pipelines using EPI2ME

link: /viruses/mpxv/mpxv-ont-epi2me-sop.html

User-interface pipelines using Epi2me

• MPXV alignment and phylogenetics pipeline using Epi2Me

link: /viruses/mpxv/mpxv-phylogenetics-epi2me-sop.html

Command line interface pipeline SOPs

• MPXV Nanopore sequencing bioinformatics protocol

link: /viruses/mpxv/mpxv-bioinformatics-sop.html