A collection of resources and documents for the genome sequencing of Mpox virus (MPXV) using a tiled amplicon approach.
Resources and documents
Background
- Mpox virus sequencing
A guide to sequencing for genomic epidemiology
link: /viruses/mpxv/artic-mpxv-guide.html
Setup guides
- MPXV bioinformatics environment setup
- Running the ARTIC MPXV analysis pipelines using EPI2ME
link: /viruses/mpxv/mpxv-it-setup.html
link: /viruses/mpxv/mpxv-ont-epi2me-sop.html
User-interface pipelines using Epi2me
- MPXV alignment and phylogenetics pipeline using Epi2Me
link: /viruses/mpxv/mpxv-phylogenetics-epi2me-sop.html
Command line interface pipeline SOPs
- MPXV Nanopore sequencing bioinformatics protocol
link: /viruses/mpxv/mpxv-bioinformatics-sop.html